Example datasets

Here are the datasets we used in this paper:

Dataset	Reference	Original source
Cell Lines	Zheng et al.	https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/jurkat https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/293t https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/jurkat:293t_50:50
Pancreas	Grün et al. Muraro et al. Lawlor et al. Baron et al. Wang et al.	https://github.com/satijalab/seurat-data
PBMC 3&68K	10X-Genomics Zheng et al.	https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k https://www.10xgenomics.com/resources/datasets/fresh-68-k-pbm-cs-donor-a-1-standard-1-1-0
MHSP	Paul et al. Nestorowa et al.	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72857 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81682
Mouse Cell Atlas	Han et al. the Tabula Muris Consortium	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108097 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109774
Human PBMC	Zheng et al.	https://support.10xgenomics.com/singlecell-gene-expression/datasets/2.1.0/pbmc8k https://support.10xgenomics.com/single-cell-vdj/datasets/2.2.0/vdj_v1_hs_pbmc_5gex
Mouse Retina	Shekhar et al. Macosko et al.	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81905 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63473
Human Cell Atlas	Regev A., et al.	https://s3.amazonaws.com/preview-ica-expression-data/ica_cord_blood_h5.h5 https://s3.amazonaws.com/preview-ica-expression-data/ica_bone_marrow_h5.h5
Mouse Brain	Saunders et al. Rosenberg et al.	http://dropviz.org/ https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM3017261
CRC	Zhang et al.	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146771
Lung	Vieira Braga et al.	https://doi.org/10.6084/m9.figshare.12420968